COSINE: A Web Server for Clonal and Subclonal Structure Inference and Evolution in Cancer Genomics
The COSINE bioinformatics platform belongs to:
- Children’s Hospital of Chongqing Medical University
- Yuxi Rongjian Informatic Technology Company
COSINE provides these services :
- Software : available for online analysis or for download.
- Technical support : essentially dedicated to NGS analysis.
- Trainings : we organize trainings dedicated to NGS data analysis and cloud computing.
COSINE contain these methods:
- 1. Sclust: Software: https://rj.run/downloads/Sclust.tgz
- 2. Pyclone: Software: https://shahlab.ca/projects/pyclone/
- 3. FastClone: Software: https://github.com/GuanLab/FastClone_Guanlab
- 4. Dpclust: Software: https://github.com/Wedge-Oxford/dpclust
- 5. phyloWGs: Software: https://github.com/morrislab/phylowgs
- 6. SciClone: Software: https://github.com/genome/sciclone
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7.
Svclone: Software: https://github.com/mcmero/Svclone -
8.
CLiP: Software: https://github.com/wwylab/CliP -
9.
TrAp: Software: https://tinyheero.github.io/2015/08/26/TrAp.html -
10.
CITUP: Software: https://sourceforge.net/projects/citup/ -
11.
CloneFinder: Software: https://github.com/gstecher/CloneFinderAPI -
12.
PhylogicNDT: Software: https://github.com/broadinstitute/PhylogicNDT
